Nextflow workflow report

[small_allen] (resumed run)

Workflow execution completed successfully!
Run times
20-May-2022 09:59:24 - 20-May-2022 10:49:38 (duration: 50m 14s)
  1 succeeded  
  2258 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/SPEAQeasy_Y2/main.nf --sample paired --reference hg38 --strand reverse --strand_mode declare --annotation /dcs04/lieber/lcolladotor/annotationFiles_LIBD001/SPEAQeasy/Annotation -with-report /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/03_SPEAQeasy_Y2/execution_reports/02-run_pipeline.html -w /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/03_SPEAQeasy_Y2/work --input /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/03_SPEAQeasy_Y2 --output /dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/03_SPEAQeasy_Y2/pipeline_output -profile jhpce -resume
CPU-Hours
2'375.0 (99.9% cached)
Launch directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/03_SPEAQeasy_Y2
Work directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/processed-data/03_SPEAQeasy_Y2/work
Project directory
/dcs04/lieber/lcolladotor/joelPTSD_LIBD3040/joelPTSD_year2/code/SPEAQeasy_Y2
Script name
main.nf
Script ID
5467c2fce564278c154724454cb5c979
Workflow session
3a1f618b-13c7-4d12-a04e-e0ab15f3dc73
Workflow profile
jhpce
Nextflow version
version 20.01.0, build 5264 (12-02-2020 10:14 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)